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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10280046_10282281_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10280046 - 10282281
Intron Length:
2236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGAGGT
5'SS Class:
major
3'SS Sequence:
CATTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
CTCTTTTTCATT
Flanking Amino Acid:
PLLRASHSNSLISECTDSEA
Intron Amino Acid Position:
1714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
63.2
41.4
Major BPS
100
1.24
0.5
100
0
Major PPT
84.9
0.79
0.8
76.7
37
Minor 5ss
35.1
-1.7
3.6
57.3
46.8
Minor BPS
53.7
0.2
1.7
69.97
42.5

Associated Gene:

Gene:
NAV2
Ensembl Gene ID:
ENSAPLG00000013035
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027167
10263981 - 10487724
223744
ENSAPLT00000045174
10263981 - 10487724
223744
ENSAPLT00000013632
10264586 - 10435226
170641
ENSAPLT00000039571
10263981 - 10487724
223744
ENSAPLT00000032702
10263981 - 10487724
223744
ENSAPLT00000029760
10263981 - 10487724
223744