About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10282455_10284911_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10282455 - 10284911
Intron Length:
2457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATGATAT
Flanking Amino Acid:
DSKKKKRKNWLRSSFKQAFG
Intron Amino Acid Position:
1781

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
77.5
32.8
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
89.7
0.89
0.7
88
29.4
Minor 5ss
30.4
-2.2
3.2
31.7
42.6
Minor BPS
47.9
-0
2.1
71.63
44.6

Associated Gene:

Gene:
NAV2
Ensembl Gene ID:
ENSAPLG00000013035
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029760
10263981 - 10487724
223744
ENSAPLT00000027167
10263981 - 10487724
223744
ENSAPLT00000045174
10263981 - 10487724
223744
ENSAPLT00000039571
10263981 - 10487724
223744
ENSAPLT00000032702
10263981 - 10487724
223744