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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10291580_10296635_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10291580 - 10296635
Intron Length:
5056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AGTTTGTTAATT
Flanking Amino Acid:
SGSFRDGFEEVHGSSLSLVS
Intron Amino Acid Position:
1489

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.3
0.77
0.7
77.9
31
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
60.6
0.41
2
78.48
38.1

Associated Gene:

Gene:
NAV2
Ensembl Gene ID:
ENSAPLG00000013035
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027167
10263981 - 10487724
223744
ENSAPLT00000045174
10263981 - 10487724
223744
ENSAPLT00000013632
10264586 - 10435226
170641
ENSAPLT00000039571
10263981 - 10487724
223744
ENSAPLT00000032702
10263981 - 10487724
223744
ENSAPLT00000029760
10263981 - 10487724
223744