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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10299392_10302974_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10299392 - 10302974
Intron Length:
3583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTG
5'SS Class:
major
3'SS Sequence:
CTGTTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TAATTTTGAAAT
Flanking Amino Acid:
CRNTLPRRQDRYTPSTQLRS
Intron Amino Acid Position:
1499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.7
40.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85.1
0.79
0.8
80
32.2
Minor 5ss
32.9
-2
3.6
46.5
48.8
Minor BPS
56.9
0.29
1.5
72.08
38.2

Associated Gene:

Gene:
NAV2
Ensembl Gene ID:
ENSAPLG00000013035
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027167
10263981 - 10487724
223744