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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10301718_10302974_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10301718 - 10302974
Intron Length:
1257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTG
5'SS Class:
major
3'SS Sequence:
AACTTTTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTCTTTTAACT
Flanking Amino Acid:
CRNTLPRRQDSDPHLDRNTL
Intron Amino Acid Position:
1357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.7
40.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.5
0.66
0.9
73.7
35.9
Minor 5ss
32.9
-2
3.6
46.5
48.8
Minor BPS
81.3
1.06
1
92.89
28.4

Associated Gene:

Gene:
NAV2
Ensembl Gene ID:
ENSAPLG00000013035
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032702
10263981 - 10487724
223744
ENSAPLT00000013632
10264586 - 10435226
170641
ENSAPLT00000039571
10263981 - 10487724
223744