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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10301718_10304141_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10301718 - 10304141
Intron Length:
2424

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
AACTTTTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTCTTTTAACT
Flanking Amino Acid:
TNSVKTTLSESDPHLDRNTL
Intron Amino Acid Position:
1477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
79.5
0.66
0.9
73.7
35.9
Minor 5ss
33.8
-1.8
2.6
43.7
43.3
Minor BPS
81.3
1.06
1
92.89
28.4

Associated Gene:

Gene:
NAV2
Ensembl Gene ID:
ENSAPLG00000013035
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029760
10263981 - 10487724
223744