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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10303041_10304141_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10303041 - 10304141
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTGGTTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTGGAC
U12 Branch Point Sequence:
TCTTGTTGGACT
Flanking Amino Acid:
TNSVKTTLSESPLSSPAASP
Intron Amino Acid Position:
1335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
47.5
-0.1
1.5
48.8
46.3
Major PPT
74.1
0.54
0.9
65.9
40.9
Minor 5ss
33.8
-1.8
2.6
43.7
43.3
Minor BPS
52.9
0.17
2
75.29
42

Associated Gene:

Gene:
NAV2
Ensembl Gene ID:
ENSAPLG00000013035
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027167
10263981 - 10487724
223744
ENSAPLT00000013632
10264586 - 10435226
170641
ENSAPLT00000039571
10263981 - 10487724
223744
ENSAPLT00000032702
10263981 - 10487724
223744