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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10394753_10398322_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10394753 - 10398322
Intron Length:
3570

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTTAGCATT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTTATTGTAATT
Flanking Amino Acid:
RFTLGQKKSSRLPGPTTRVS
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1.1
83
36.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
79.2
0.66
0.9
78.9
33.7
Minor 5ss
41.7
-0.9
2.9
58.2
46.1
Minor BPS
49.7
0.06
2
71.2
40.9

Associated Gene:

Gene:
NAV2
Ensembl Gene ID:
ENSAPLG00000013035
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027167
10263981 - 10487724
223744
ENSAPLT00000013632
10264586 - 10435226
170641
ENSAPLT00000045174
10263981 - 10487724
223744
ENSAPLT00000039571
10263981 - 10487724
223744
ENSAPLT00000029760
10263981 - 10487724
223744