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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10394753_10399700_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10394753 - 10399700
Intron Length:
4948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAAAT
5'SS Class:
major
3'SS Sequence:
ATTCTTTCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTTATTGTAATT
Flanking Amino Acid:
QLKAQPEMQSRLPGPTTRVS
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
76.8
33.7
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
79.2
0.66
0.9
78.9
33.7
Minor 5ss
28.3
-2.5
3.2
39
46.4
Minor BPS
49.7
0.06
2
71.2
40.9

Associated Gene:

Gene:
NAV2
Ensembl Gene ID:
ENSAPLG00000013035
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032702
10263981 - 10487724
223744