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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10398392_10399700_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10398392 - 10399700
Intron Length:
1309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAAAT
5'SS Class:
major
3'SS Sequence:
TCCTGTCGTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
ATGTCTTCCACT
Flanking Amino Acid:
QLKAQPEMQSSASPRDSSQS
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
0.9
76.8
33.7
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
73.8
0.54
1
67.8
37.8
Minor 5ss
28.3
-2.5
3.2
39
46.4
Minor BPS
52.9
0.17
2
74.27
42.9

Associated Gene:

Gene:
NAV2
Ensembl Gene ID:
ENSAPLG00000013035
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027167
10263981 - 10487724
223744
ENSAPLT00000013632
10264586 - 10435226
170641
ENSAPLT00000045174
10263981 - 10487724
223744
ENSAPLT00000039571
10263981 - 10487724
223744
ENSAPLT00000029760
10263981 - 10487724
223744