Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10399975_10407896_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10399975 - 10407896

Intron Length:

7922

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTCAA

5'SS Class:

strong_major

3'SS Sequence:

TATTGCTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

TATTGCTTTACA

Flanking Amino Acid:

GINIQGLSAEEIRNGNLKAI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.8

0.96

0.8

79.3

31.1

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

83.3

0.75

0.9

76.6

37.2

Minor 5ss

28.1

-2.5

2.7

31.6

42.6

Minor BPS

61.8

0.36

2.1

76.43

40.4

Associated Gene:

Gene:

NAV2

Ensembl Gene ID:

ENSAPLG00000013035

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027167

10263981 - 10487724

223744

ENSAPLT00000045174

10263981 - 10487724

223744

ENSAPLT00000013632

10264586 - 10435226

170641

ENSAPLT00000039571

10263981 - 10487724

223744

ENSAPLT00000032702

10263981 - 10487724

223744

ENSAPLT00000029760

10263981 - 10487724

223744