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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10407970_10422398_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10407970 - 10422398
Intron Length:
14429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTTGAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
TGTTCTTGAATA
Flanking Amino Acid:
MIENIDACLSF
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.5
35
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
68.7
0.42
1
66.1
39.7
Minor 5ss
37.6
-1.4
2.8
48.3
42.5
Minor BPS
70.3
0.63
1.3
77
33.7

Associated Gene:

Gene:
NAV2
Ensembl Gene ID:
ENSAPLG00000013035
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027167
10263981 - 10487724
223744
ENSAPLT00000045174
10263981 - 10487724
223744
ENSAPLT00000013632
10264586 - 10435226
170641
ENSAPLT00000039571
10263981 - 10487724
223744
ENSAPLT00000032702
10263981 - 10487724
223744
ENSAPLT00000029760
10263981 - 10487724
223744