Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10428930_10487466_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10428930 - 10487466

Intron Length:

58537

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGAAAG

5'SS Class:

major

3'SS Sequence:

TTCTTCCTAACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAT

U12 Branch Point Sequence:

TTCTTCCTAACA

Flanking Amino Acid:

SSVENGFDTQIYTDWANHYL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

1.1

72.8

38.2

Major BPS

77.9

0.69

0.8

75.9

Major PPT

81.2

0.7

0.8

77.5

29.9

Minor 5ss

29.2

-2.4

2.6

31.6

42.3

Minor BPS

69.1

0.6

1.7

79.54

36.7

Associated Gene:

Gene:

NAV2

Ensembl Gene ID:

ENSAPLG00000013035

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029760

10263981 - 10487724

223744

ENSAPLT00000027167

10263981 - 10487724

223744

ENSAPLT00000045174

10263981 - 10487724

223744

ENSAPLT00000039571

10263981 - 10487724

223744

ENSAPLT00000032702

10263981 - 10487724

223744