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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1046556_1056013_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1046556 - 1056013
Intron Length:
9458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTTTTTTTACCT
Flanking Amino Acid:
DRPLPDLRPNGCRNLTFPDR
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
86.7
0.82
0.7
84.5
23.4
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
68.3
0.65
1.6
83.79
37.4

Associated Gene:

Gene:
GALNT18
Ensembl Gene ID:
ENSAPLG00000014984
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015659
939066 - 1154469
215404