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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_1056181_1084976_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1056181 - 1084976
Intron Length:
28796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTGCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TATTTCTTAACA
Flanking Amino Acid:
IILVDDNSNNEELKEKLKKY
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.9
31.6
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
78.6
0.64
0.9
75
33.4
Minor 5ss
32.2
-2
3.5
44.1
44.7
Minor BPS
86.5
1.14
0.9
88.38
28

Associated Gene:

Gene:
GALNT18
Ensembl Gene ID:
ENSAPLG00000014984
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015659
939066 - 1154469
215404