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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10684686_10684785_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
10684686 - 10684785
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCGGC
5'SS Class:
major
3'SS Sequence:
CCCCGTGGCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
GGCGCCTGACCG
Flanking Amino Acid:
DGDSAKDEDKENRPAPPGTP
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
64.1
41.8
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
58
0.18
1
51.7
36.8
Minor 5ss
35.3
-1.7
3.6
49.7
46.9
Minor BPS
44.7
-0.5
1.9
45.56
46.3

Associated Gene:

Gene:
E2F8
Ensembl Gene ID:
ENSAPLG00000009091
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030672
10684506 - 10696023
11518