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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10684686_10685310_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10684686 - 10685310
Intron Length:
625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCGGC
5'SS Class:
major
3'SS Sequence:
TATTTCTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTCTTCTTATTT
Flanking Amino Acid:
DGDSAKDEDKEHLSGDEYEK
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
64.1
41.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
73
0.52
0.9
69.2
36.7
Minor 5ss
35.3
-1.7
3.6
49.7
46.9
Minor BPS
61.9
0.45
1.6
74.56
43.3

Associated Gene:

Gene:
E2F8
Ensembl Gene ID:
ENSAPLG00000009091
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009460
10684506 - 10694866
10361