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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10685468_10686518_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10685468 - 10686518
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TTCTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
ICLDEVAEELNVERRRIYDI
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
67.3
39.4
Major BPS
79.4
0.73
1
80.1
32
Major PPT
86
0.81
0.7
85.7
27.3
Minor 5ss
42.7
-0.8
2.8
58.3
40.4
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
E2F8
Ensembl Gene ID:
ENSAPLG00000009091
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030672
10684506 - 10696023
11518
ENSAPLT00000009460
10684506 - 10694866
10361