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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10712228_10713420_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10712228 - 10713420
Intron Length:
1193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAGTTACT
5'SS Class:
major
3'SS Sequence:
ATTATATATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATGCTAAATT
Flanking Amino Acid:
AEKIMGGGKVNILLRSTNLA
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
71
39
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
72.9
0.51
1
63.8
45.8
Minor 5ss
38.8
-1.3
3.1
52.2
38.5
Minor BPS
52.7
0.16
2.1
72.09
45.3

Associated Gene:

Gene:
CSRP3
Ensembl Gene ID:
ENSAPLG00000008804
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009182
10705775 - 10714094
8320