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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10713481_10714014_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10713481 - 10714014
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGCCAG
5'SS Class:
major
3'SS Sequence:
CCTTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATTATTTACCC
Flanking Amino Acid:
DFAELCKKEQICYAKNFGPK
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
55.2
43.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
88.3
0.86
0.7
83.5
24.7
Minor 5ss
45
-0.5
2.8
55.9
42.9
Minor BPS
59.8
0.29
1.8
72.39
38.6

Associated Gene:

Gene:
CSRP3
Ensembl Gene ID:
ENSAPLG00000008804
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009182
10705775 - 10714094
8320