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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10727460_10727840_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10727460 - 10727840
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTACGTATC
5'SS Class:
major
3'SS Sequence:
TTCCCTCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CTTTTGTTACCC
Flanking Amino Acid:
PLLTAFADIVHLPDISFSFA
Intron Amino Acid Position:
469

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
70.5
40.2
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
79
0.65
0.7
77
25
Minor 5ss
41.4
-1
3
59.7
38.9
Minor BPS
50.2
-0
2.3
69.02
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008364
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008713
10726871 - 10737185
10315