About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10727967_10728358_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10727967 - 10728358
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTTGA
5'SS Class:
major
3'SS Sequence:
TTCTCTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAAAT
U12 Branch Point Sequence:
TTCTCTTCCACA
Flanking Amino Acid:
SGHLNFQIEHHLFPTMPRHN
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
65.2
37.3
Major BPS
67.2
0.43
1.2
73.3
39.1
Major PPT
84.1
0.77
0.7
79.7
25.9
Minor 5ss
36.3
-1.6
2.9
45.7
43.5
Minor BPS
54.8
0.14
2
71.01
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008364
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019192
10726725 - 10737906
11182
ENSAPLT00000008713
10726871 - 10737185
10315
ENSAPLT00000019549
10726827 - 10739401
12575