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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10728439_10729050_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10728439 - 10729050
Intron Length:
612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
TAAACGTTATCT
Flanking Amino Acid:
DKNVDWFSTQLQATCNVHQS
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
78.1
36.3
Major BPS
69
0.47
1
69.9
32.6
Major PPT
90.1
0.9
0.6
89
20
Minor 5ss
34.6
-1.8
3.2
49.1
46.6
Minor BPS
48.6
-0
2.3
71.09
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008364
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019549
10726827 - 10739401
12575
ENSAPLT00000019192
10726725 - 10737906
11182
ENSAPLT00000008713
10726871 - 10737185
10315