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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10729553_10730383_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10729553 - 10730383
Intron Length:
831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAG
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
GTTTCCTGTATT
Flanking Amino Acid:
YFVVQRKQWVDLAWMLTFYI
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.7
34.9
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
78.9
0.65
0.9
72.3
36.6
Minor 5ss
39.7
-1.2
2.8
46.1
43.6
Minor BPS
62.8
0.48
1.8
81.84
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008364
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008713
10726871 - 10737185
10315
ENSAPLT00000019549
10726827 - 10739401
12575
ENSAPLT00000019192
10726725 - 10737906
11182