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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10730461_10730588_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10730461 - 10730588
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TTCTTTCTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TCTTTCTTATAG
Flanking Amino Acid:
YNHQHKYFFIIGPPALVPLY
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.6
33.8
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
88
0.85
0.6
84.1
24.1
Minor 5ss
32.8
-2
2.7
42.3
38.4
Minor BPS
57.3
0.09
1.8
63.88
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008364
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019549
10726827 - 10739401
12575
ENSAPLT00000019192
10726725 - 10737906
11182
ENSAPLT00000008713
10726871 - 10737185
10315