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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10732396_10733243_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10732396 - 10733243
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTCCTCCCCT
Flanking Amino Acid:
ISAVLLGTVQAQAGWLQHDF
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
81.4
32.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
78.5
0.64
0.8
68.9
31.6
Minor 5ss
39.7
-1.2
2.9
51.2
45.7
Minor BPS
44.4
-0.3
3.7
84.08
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008364
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019192
10726725 - 10737906
11182
ENSAPLT00000008713
10726871 - 10737185
10315
ENSAPLT00000019549
10726827 - 10739401
12575