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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10753041_10753901_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10753041 - 10753901
Intron Length:
861

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTATCTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTTGCATGGATT
Flanking Amino Acid:
VHKFVIGHLKGASANWWNHR
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
74.2
36.3
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
69.7
0.44
1
61.7
44.3
Minor 5ss
33.1
-1.9
3.8
49.2
47.3
Minor BPS
51.8
0.14
1.9
76.96
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007497
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007839
10746397 - 10766518
20122