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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10754028_10757444_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10754028 - 10757444
Intron Length:
3417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
CTGTGTCCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GCTTTCTTATCT
Flanking Amino Acid:
FVLGDTQPVEYGKKKLKYLP
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
76.3
0.59
0.9
69.7
36.7
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
67.7
0.63
1.6
80.05
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007497
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007839
10746397 - 10766518
20122