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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10757506_10757999_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10757506 - 10757999
Intron Length:
494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CTTTGCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
ATGTCCAAAATA
Flanking Amino Acid:
YNHQHEYFFFIFPPLLIPVY
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
79
0.72
1
69
38.9
Major PPT
86.2
0.81
0.8
80.4
31.5
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
52
0.06
1.9
66.5
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007497
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007839
10746397 - 10766518
20122