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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10758404_10760810_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10758404 - 10760810
Intron Length:
2407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TTGTTTCTAAAG
Flanking Amino Acid:
LGSLSLLTFVRFLESHWFVW
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.1
Major BPS
70.2
0.5
1
72.1
33
Major PPT
77.8
0.62
1
78.9
33.5
Minor 5ss
30.7
-2.2
3.7
46.1
49.1
Minor BPS
50.2
-0.1
1.8
60.59
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007497
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007839
10746397 - 10766518
20122