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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10763001_10763903_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10763001 - 10763903
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
CTCTCTATTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTTTCTCATGT
Flanking Amino Acid:
TGHLNFQIEHHLFPTMPRHN
Intron Amino Acid Position:
386

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
71.9
39.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
70
0.45
1
67.9
36.6
Minor 5ss
36.1
-1.6
2.9
48.1
41.6
Minor BPS
48.8
-0
2.1
72.47
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007497
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007839
10746397 - 10766518
20122