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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10764030_10765190_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10764030 - 10765190
Intron Length:
1161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCAAAC
U12 Branch Point Sequence:
TTTCTTCCCACA
Flanking Amino Acid:
PLGKAFVDIVGSLKKSGDLW
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
69.5
36.3
Major BPS
47.4
-0.1
1
50.7
32.1
Major PPT
85.2
0.79
0.7
80.5
25
Minor 5ss
38.8
-1.3
3
44
43.3
Minor BPS
42.7
-0.5
2.1
61.19
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007497
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007839
10746397 - 10766518
20122