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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10782216_10782561_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10782216 - 10782561
Intron Length:
346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGAGGG
5'SS Class:
major
3'SS Sequence:
TTTTGCCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCTAC
U12 Branch Point Sequence:
TCTTCCCTACCC
Flanking Amino Acid:
YIQQGLVRQDVELMFWEVMR
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
61.1
43.9
Major BPS
48.5
-0
1.3
46.3
38.4
Major PPT
83.1
0.74
0.8
78
30.8
Minor 5ss
30.3
-2.3
3.3
39.2
46
Minor BPS
60.2
0.3
2
75.12
41.7

Associated Gene:

Gene:
RAB3IL1
Ensembl Gene ID:
ENSAPLG00000007457
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045159
10781741 - 10797502
15762
ENSAPLT00000040681
10781741 - 10797502
15762
ENSAPLT00000007742
10781741 - 10796495
14755
ENSAPLT00000047931
10781741 - 10797502
15762