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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10782629_10783533_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10782629 - 10783533
Intron Length:
905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAC
U12 Branch Point Sequence:
AGTTCTGTATCT
Flanking Amino Acid:
YYISPSCRARITAACNFFTY
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.8
38.7
Major BPS
72.6
0.56
0.9
63.1
35.8
Major PPT
85.2
0.79
0.7
84.4
23.5
Minor 5ss
34.3
-1.8
3.1
42
44.5
Minor BPS
50.1
0.08
2.2
74.8
42.2

Associated Gene:

Gene:
RAB3IL1
Ensembl Gene ID:
ENSAPLG00000007457
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040681
10781741 - 10797502
15762
ENSAPLT00000007742
10781741 - 10796495
14755
ENSAPLT00000047931
10781741 - 10797502
15762
ENSAPLT00000045159
10781741 - 10797502
15762