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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10783634_10786499_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10783634 - 10786499
Intron Length:
2866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGGAT
U12 Branch Point Sequence:
CTGGGCTGAAAC
Flanking Amino Acid:
KGSAEDCGGPKKCALSGLPR
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
75.8
33.6
Major BPS
58.9
0.22
1.5
59.3
47.1
Major PPT
83.2
0.75
0.7
77.4
24.6
Minor 5ss
34.3
-1.8
3.2
43.2
38.3
Minor BPS
44
-0.4
2
51.96
45.1

Associated Gene:

Gene:
RAB3IL1
Ensembl Gene ID:
ENSAPLG00000007457
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040681
10781741 - 10797502
15762