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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10785631_10786499_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10785631 - 10786499
Intron Length:
869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTCCTTTTGATG
Flanking Amino Acid:
KGSAEDCGGPNRFQSQIVMK
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
75.8
33.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
34.3
-1.8
3.2
43.2
38.3
Minor BPS
55.4
0.03
1.3
58.55
38

Associated Gene:

Gene:
RAB3IL1
Ensembl Gene ID:
ENSAPLG00000007457
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047931
10781741 - 10797502
15762
ENSAPLT00000045159
10781741 - 10797502
15762
ENSAPLT00000007742
10781741 - 10796495
14755