Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10790019_10790092_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10790019 - 10790092

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAACT

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTCTCGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGGTGAC

U12 Branch Point Sequence:

GTGCTGGTGACT

Flanking Amino Acid:

EKQLKEARGKIDMLQAEVTA

Intron Amino Acid Position:

117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.92

0.8

83.3

27.9

Major BPS

56.2

0.15

1.3

48.8

46.3

Major PPT

81.7

0.71

0.8

77.1

31.6

Minor 5ss

30.7

-2.2

2.9

41.1

44.9

Minor BPS

40.9

-0.6

2.5

60.37

43.6

Associated Gene:

Gene:

RAB3IL1

Ensembl Gene ID:

ENSAPLG00000007457

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045159

10781741 - 10797502

15762

ENSAPLT00000040681

10781741 - 10797502

15762

ENSAPLT00000007742

10781741 - 10796495

14755

ENSAPLT00000047931

10781741 - 10797502

15762