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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10790171_10791725_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10790171 - 10791725
Intron Length:
1555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACCACCC
5'SS Class:
major
3'SS Sequence:
CTTTCTGATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTTTCTGATCC
Flanking Amino Acid:
LEELTASLFEEAHKMVREAN
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.2
54.5
43.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
77.3
0.61
0.9
69.5
40.7
Minor 5ss
37.7
-1.4
3.3
52.5
44.1
Minor BPS
58.6
0.25
1.7
70.59
40.9

Associated Gene:

Gene:
RAB3IL1
Ensembl Gene ID:
ENSAPLG00000007457
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045159
10781741 - 10797502
15762
ENSAPLT00000040681
10781741 - 10797502
15762
ENSAPLT00000007742
10781741 - 10796495
14755
ENSAPLT00000047931
10781741 - 10797502
15762