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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10791822_10792277_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10791822 - 10792277
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCCT
5'SS Class:
major
3'SS Sequence:
TCTTCCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
TCTTCCTCAACA
Flanking Amino Acid:
LKEELHKAQKELKLKDKECE
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.4
41.1
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
77.9
0.63
0.8
73.7
29.9
Minor 5ss
32.7
-2
3.4
48.4
47.3
Minor BPS
77.6
0.86
1.5
83.78
36.8

Associated Gene:

Gene:
RAB3IL1
Ensembl Gene ID:
ENSAPLG00000007457
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045159
10781741 - 10797502
15762
ENSAPLT00000040681
10781741 - 10797502
15762
ENSAPLT00000007742
10781741 - 10796495
14755
ENSAPLT00000047931
10781741 - 10797502
15762