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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10807709_10808628_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10807709 - 10808628
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCACC
5'SS Class:
major
3'SS Sequence:
CTCTCCCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TGACGATTATTT
Flanking Amino Acid:
SLYFAISLVYRLILSESQRL
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65.8
40.2
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79.4
0.66
0.7
77.2
24.8
Minor 5ss
33.8
-1.8
3.1
43.2
44.2
Minor BPS
43
-0.4
2.1
60.47
42.8

Associated Gene:

Gene:
BEST1
Ensembl Gene ID:
ENSAPLG00000007353
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007634
10807549 - 10815890
8342