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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10808724_10808965_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10808724 - 10808965
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
AGCTCCCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAG
U12 Branch Point Sequence:
TTCTCCTTCAGG
Flanking Amino Acid:
AELIPVSFVLGFYVALVVSR
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
67.8
43.5
Major BPS
51.1
0.03
1.6
63
43.2
Major PPT
65.7
0.35
0.9
55.7
35.8
Minor 5ss
32.2
-2
3.1
34.8
41.4
Minor BPS
56.6
0.06
2.2
66.7
47.1

Associated Gene:

Gene:
BEST1
Ensembl Gene ID:
ENSAPLG00000007353
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007634
10807549 - 10815890
8342