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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10813760_10814124_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10813760 - 10814124
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCAAAA
U12 Branch Point Sequence:
ACCGTGTTACAG
Flanking Amino Acid:
PSFLGSTFDISMQKEEMEFQ
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
71.1
34.7
Major BPS
48.7
-0
1
53.2
28.8
Major PPT
73.8
0.54
0.8
65.4
36.2
Minor 5ss
26.1
-2.7
3.2
32
42.6
Minor BPS
35.8
-1.2
2.2
33.22
41.1

Associated Gene:

Gene:
BEST1
Ensembl Gene ID:
ENSAPLG00000007353
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007634
10807549 - 10815890
8342