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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10818782_10820011_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10818782 - 10820011
Intron Length:
1230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGGGTGCC
5'SS Class:
major
3'SS Sequence:
GCATTCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
GGCTTCTGAGCA
Flanking Amino Acid:
YLSMVRCLSRSYYFDRDDVA
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.1
62.7
37.5
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
80.1
0.68
0.9
76.9
37
Minor 5ss
26.7
-2.7
3.2
26.6
36.8
Minor BPS
48.8
-0
1.7
57.58
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007205
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022682
10816714 - 10820818
4105