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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10820030_10820320_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10820030 - 10820320
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTATACTT
Flanking Amino Acid:
LYASYVYLSMVRCLSRSYYF
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
64.9
41.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.5
0.73
0.7
77.1
31.6
Minor 5ss
26.8
-2.7
3
28.2
38.6
Minor BPS
49.8
0.06
1.8
72.75
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007205
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022682
10816714 - 10820818
4105