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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10853693_10853838_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10853693 - 10853838
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGCTG
5'SS Class:
major
3'SS Sequence:
TTGCATACTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATA
Flanking Amino Acid:
IIYNIPPGVQGPEHPNPGKS
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
60.6
45.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.6
0.53
0.9
67
38.9
Minor 5ss
27.8
-2.5
3.5
37.7
47.1
Minor BPS
76.4
0.83
1
79.34
30.5

Associated Gene:

Gene:
DTX4
Ensembl Gene ID:
ENSAPLG00000019223
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041990
10852346 - 10860169
7824