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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10854001_10854436_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10854001 - 10854436
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TTCCTCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TGCTCCCCACTC
Flanking Amino Acid:
LVAMYNNGNKDGSLQCPTCK
Intron Amino Acid Position:
465

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65.7
40
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79.4
0.66
0.7
77.3
24.7
Minor 5ss
28.5
-2.5
3.6
41.2
45.5
Minor BPS
44.3
-0.4
2.1
55.95
42.6

Associated Gene:

Gene:
DTX4
Ensembl Gene ID:
ENSAPLG00000019223
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041990
10852346 - 10860169
7824