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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10854590_10854815_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10854590 - 10854815
Intron Length:
226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGCGAGCA
5'SS Class:
major
3'SS Sequence:
CCCGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TCCGTCTGACCC
Flanking Amino Acid:
LQKVRHPPDEDCTICMERLS
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
65
34.8
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
68
0.4
0.8
61
29.2
Minor 5ss
24.2
-3
3.2
30.5
42.8
Minor BPS
46.2
-0.3
1.8
53.77
44.5

Associated Gene:

Gene:
DTX4
Ensembl Gene ID:
ENSAPLG00000019223
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041990
10852346 - 10860169
7824