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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10854878_10854970_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10854878 - 10854970
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGACGT
5'SS Class:
major
3'SS Sequence:
GTGTTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GCCCCTCTGACT
Flanking Amino Acid:
RKTTKKQAKKGKTPEEVLKK
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
62.5
43.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
72.6
0.51
0.9
66.4
35.7
Minor 5ss
27.8
-2.5
3.1
31.2
42.3
Minor BPS
48.4
-0
1.7
61.93
42.2

Associated Gene:

Gene:
DTX4
Ensembl Gene ID:
ENSAPLG00000019223
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041990
10852346 - 10860169
7824