Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10855289_10856185_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10855289 - 10856185

Intron Length:

897

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGG|GTGAGTCCT

5'SS Class:

strong_major

3'SS Sequence:

GGACTCTCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAT

U12 Branch Point Sequence:

CCTCCGTGGACT

Flanking Amino Acid:

IAQSRVLIASGVPTVPVKNL

Intron Amino Acid Position:

318

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

71.4

40.3

Major BPS

66.4

0.41

1.1

56.9

40.5

Major PPT

65.3

0.35

0.9

58.1

38.2

Minor 5ss

-2.2

2.9

34.5

Minor BPS

46.3

-0.2

2.2

65.19

45.4

Associated Gene:

Gene:

DTX4

Ensembl Gene ID:

ENSAPLG00000019223

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041990

10852346 - 10860169

7824