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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_10863111_10863290_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10863111 - 10863290
Intron Length:
180

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTTCA
5'SS Class:
major
3'SS Sequence:
TTTCCCCGCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TCTTGTTTATTT
Flanking Amino Acid:
SDVADLLDIYVERQGLDASV
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.2
73.7
33.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
74
0.54
0.9
68.7
31.7
Minor 5ss
36.4
-1.5
2.8
40.8
38.7
Minor BPS
54.2
0.21
2
74.81
43.2

Associated Gene:

Gene:
CNTF
Ensembl Gene ID:
ENSAPLG00000028898
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043351
10861897 - 10863586
1690